Any good anti virus software will work on USB drives. The computer sees a USB drive as just another, but removable, drive.
Is there an antivirus software for USB drives?norton 360
What you need to do is when you attach your USB drive to a port you need to: Open ''My Computer'' -%26gt; right click on the USB Drive (listed as removable storage)-%26gt; Select the option ''Scan for Viruses''. This will launch your computer's AV program and scan the USB drive for any virii. This is the only way one can scan a USB drive for virii. As said in the previous answer any good AV will do this.
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